PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015183001
Common NameVIT_11s0016g02010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 664aa    MW: 73387.3 Da    PI: 6.86
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015183001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.7e-354175072101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Flkk++e++ed+e+++++sws   nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F+ gk++l
  GSVIVT01015183001 417 FLKKTFEMVEDPETDSVVSWSVARNSFIVWDSHNFSQSLLPKYFKHSNFSSFIRQLNTYGFRKIDSDR---------WEFANEAFQGGKRHL 499
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++ikr++
  GSVIVT01015183001 500 LKNIKRRR 507
                        ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF019754.8E-4244236IPR002828Survival protein SurE-like phosphatase/nucleotidase
Gene3DG3DSA:3.40.1210.103.6E-6844249IPR002828Survival protein SurE-like phosphatase/nucleotidase
SuperFamilySSF641678.24E-4644247IPR002828Survival protein SurE-like phosphatase/nucleotidase
Gene3DG3DSA:3.40.1210.103.6E-68307336IPR002828Survival protein SurE-like phosphatase/nucleotidase
SMARTSM004153.9E-56413506IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-37413506IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-32413506IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-30417506IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-18417440IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-18455467IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340456480IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-18468480IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEPASLISNL QQVLITKRED GNSISSCSST VDESAVKDCS RAVVLVTNGD GIESPGLTSL  60
VQALLREPRF HVHVCAPQSD KSVSGHSMTV QETLTACSAE IGGATAYEVS GTPADCVSLA  120
LSGALFSWSK PVLVICGINK GSSYGLNMFH SGAVAGAREA LLCGVPALCI SMNWKEDVSC  180
DNDFKDAVNV CLPIIHAAIR DIEKGIFPKS CLVNIEIPSS PLKNKGFKVA RQSLRRPALI  240
WQAVSATKHP SIGHFMSNQQ SLGFKLAQLG RDASAMGAAR CLNSDQKNQE IESVGVAGKL  300
SSQKTVKKYF RLKFQEMEQG KADEDLDFKA VENGFVKDEE EEERKKEMES VEVKEESMWV  360
EVEDSGELWG SSVAAKEEKM LEADGGGESG WCCSSLAAAA EVAKPMEGLH EAGPPPFLKK  420
TFEMVEDPET DSVVSWSVAR NSFIVWDSHN FSQSLLPKYF KHSNFSSFIR QLNTYGFRKI  480
DSDRWEFANE AFQGGKRHLL KNIKRRRHGC LQQQGSRSGA ESVKLQLEAE VESLRKDQNI  540
LNVEILRMRQ RQETSQNHLT AVEERIRGAE CKQKQMFIFM AKAVKNPSFV QQLIQKRQKR  600
ELGDGEIGKK RRLASMLSVG SLLEAIFSNQ TVHYRNQNLV QEEPSLQSEI QSLFFAIRET  660
FNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2440850617129Heat shock factor protein 1
5d5v_B2e-2440850617129Heat shock factor protein 1
5d5v_D2e-2440850617129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1499505LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4798030.0AM479803.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X072350.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279415.10.0PREDICTED: uncharacterized protein LOC100245780 isoform X1
TrEMBLD7TB590.0D7TB59_VITVI; Putative uncharacterized protein
STRINGVIT_11s0016g02010.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-90heat shock transcription factor A2