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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01015183001 | ||||||||
Common Name | VIT_11s0016g02010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HSF | ||||||||
Protein Properties | Length: 664aa MW: 73387.3 Da PI: 6.86 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.1 | 7.7e-35 | 417 | 507 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Flkk++e++ed+e+++++sws nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F+ gk++l GSVIVT01015183001 417 FLKKTFEMVEDPETDSVVSWSVARNSFIVWDSHNFSQSLLPKYFKHSNFSSFIRQLNTYGFRKIDSDR---------WEFANEAFQGGKRHL 499 9********************999*****************************************999.........*************** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++ikr++ GSVIVT01015183001 500 LKNIKRRR 507 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01975 | 4.8E-42 | 44 | 236 | IPR002828 | Survival protein SurE-like phosphatase/nucleotidase |
Gene3D | G3DSA:3.40.1210.10 | 3.6E-68 | 44 | 249 | IPR002828 | Survival protein SurE-like phosphatase/nucleotidase |
SuperFamily | SSF64167 | 8.24E-46 | 44 | 247 | IPR002828 | Survival protein SurE-like phosphatase/nucleotidase |
Gene3D | G3DSA:3.40.1210.10 | 3.6E-68 | 307 | 336 | IPR002828 | Survival protein SurE-like phosphatase/nucleotidase |
SMART | SM00415 | 3.9E-56 | 413 | 506 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 413 | 506 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.75E-32 | 413 | 506 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-30 | 417 | 506 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-18 | 417 | 440 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-18 | 455 | 467 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 456 | 480 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-18 | 468 | 480 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MEPASLISNL QQVLITKRED GNSISSCSST VDESAVKDCS RAVVLVTNGD GIESPGLTSL 60 VQALLREPRF HVHVCAPQSD KSVSGHSMTV QETLTACSAE IGGATAYEVS GTPADCVSLA 120 LSGALFSWSK PVLVICGINK GSSYGLNMFH SGAVAGAREA LLCGVPALCI SMNWKEDVSC 180 DNDFKDAVNV CLPIIHAAIR DIEKGIFPKS CLVNIEIPSS PLKNKGFKVA RQSLRRPALI 240 WQAVSATKHP SIGHFMSNQQ SLGFKLAQLG RDASAMGAAR CLNSDQKNQE IESVGVAGKL 300 SSQKTVKKYF RLKFQEMEQG KADEDLDFKA VENGFVKDEE EEERKKEMES VEVKEESMWV 360 EVEDSGELWG SSVAAKEEKM LEADGGGESG WCCSSLAAAA EVAKPMEGLH EAGPPPFLKK 420 TFEMVEDPET DSVVSWSVAR NSFIVWDSHN FSQSLLPKYF KHSNFSSFIR QLNTYGFRKI 480 DSDRWEFANE AFQGGKRHLL KNIKRRRHGC LQQQGSRSGA ESVKLQLEAE VESLRKDQNI 540 LNVEILRMRQ RQETSQNHLT AVEERIRGAE CKQKQMFIFM AKAVKNPSFV QQLIQKRQKR 600 ELGDGEIGKK RRLASMLSVG SLLEAIFSNQ TVHYRNQNLV QEEPSLQSEI QSLFFAIRET 660 FNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 408 | 506 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 408 | 506 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 408 | 506 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 499 | 505 | LKNIKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM479803 | 0.0 | AM479803.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X072350.8, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279415.1 | 0.0 | PREDICTED: uncharacterized protein LOC100245780 isoform X1 | ||||
TrEMBL | D7TB59 | 0.0 | D7TB59_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_11s0016g02010.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-90 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01015183001 |